Package: tigger
Type: Package
Version: 1.2.0.999
Date: 2026-10-09
Authors@R: c(person("Daniel", "Gadala-Maria", role=c("aut"), 
                    email="daniel.gadala-maria@yale.edu"),
             person("Susanna", "Marquez", role=c("aut", "cre"), 
                    email="susanna.marquez@yale.edu"),                    
             person("Moriah", "Cohen", role=c("aut"), 
                    email="moriah.cohen@biu.ac.il"),
             person("Ayelet", "Peres", role=c("aut"), 
                    email="ayelet.peres@yale.edu"),
             person("Jason", "Vander Heiden", role=c("aut"), 
                    email="jason.vanderheiden@gmail.com"),
             person("Gur", "Yaari", role=c("aut"), 
                    email="gur.yaari@yale.edu"),
             person("Steven", "Kleinstein", role=c("aut", "cph"), 
                    email="steven.kleinstein@yale.edu"))
Title: Infers Novel Immunoglobulin Alleles from Sequencing Data
Description: Infers the V genotype of an individual from immunoglobulin
        (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes
        detection of any novel alleles. This information is then used
        to correct existing V allele calls from among the sample
        sequences. Citations: Gadala-Maria, et al (2015)
        <doi:10.1073/pnas.1417683112>, Gadala-Maria, et al (2019)
        <doi:10.3389/fimmu.2019.00129>.
License: AGPL-3
URL: https://tigger.readthedocs.io
BugReports: https://github.com/immcantation/tigger/issues
LazyData: true
BuildVignettes: true
VignetteBuilder: knitr
Encoding: UTF-8
Depends: R (>= 4.0), ggplot2 (>= 3.4.0)
Imports: alakazam (>= 1.5.0), dplyr (>= 1.0.0), doParallel, foreach,
        graphics, gridExtra, gtools, iterators, lazyeval, parallel,
        rlang, stats, stringi, tidyr (>= 1.1.0), utils
Suggests: knitr, rmarkdown, testthat
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libglpk-dev libbz2-dev libicu-dev liblzma-dev
        libxml2-dev libx11-dev xz-utils zlib1g-dev
Repository: https://immcantation.r-universe.dev
Date/Publication: 2026-10-09 11:43:49 UTC
RemoteUrl: https://github.com/immcantation/tigger
RemoteRef: HEAD
RemoteSha: 2a5ef57a6d6c66691f2aaa43de174073bed9a90e
NeedsCompilation: no
Packaged: 2026-10-09 16:44:54 UTC; root
Author: Daniel Gadala-Maria [aut],
  Susanna Marquez [aut, cre],
  Moriah Cohen [aut],
  Ayelet Peres [aut],
  Jason Vander Heiden [aut],
  Gur Yaari [aut],
  Steven Kleinstein [aut, cph]
Maintainer: Susanna Marquez <susanna.marquez@yale.edu>