Package: scoper 1.5.0.999

Susanna Marquez

scoper: Spectral Clustering-Based Method for Identifying B Cell Clones

Provides a computational framework for identification of B cell clones from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main functions are included (identicalClones, hierarchicalClones, and spectralClones) that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins) which share the same V gene, J gene and junction length. Nouri N and Kleinstein SH (2018) <doi:10.1093/bioinformatics/bty235>. Nouri N and Kleinstein SH (2019) <doi:10.1101/788620>. Gupta NT, et al. (2017) <doi:10.4049/jimmunol.1601850>.

Authors:Nima Nouri [aut], Edel Aron [ctb], Robert Bjornson [ctb], Gisela Gabernet [ctb], Cole Jensen [ctb], Huimin Lyu [ctb], Susanna Marquez [ctb, cre], Jason Vander Heiden [aut], Steven Kleinstein [aut, cph]

scoper_1.5.0.999.tar.gz
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scoper_1.5.0.999.tgz(r-4.6-x86_64)scoper_1.5.0.999.tgz(r-4.6-arm64)scoper_1.5.0.999.tgz(r-4.5-x86_64)scoper_1.5.0.999.tgz(r-4.5-arm64)
scoper_1.5.0.999.tar.gz(r-4.7-arm64)scoper_1.5.0.999.tar.gz(r-4.7-x86_64)scoper_1.5.0.999.tar.gz(r-4.6-arm64)scoper_1.5.0.999.tar.gz(r-4.6-x86_64)
scoper_1.5.0.999.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
scoper/json (API)

# Install 'scoper' in R:

install.packages('scoper', repos = c('https://immcantation.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/immcantation/scoper/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

cpp

6.96 score 191 scripts 649 downloads 8 exports 94 dependencies

Last updated from:810ad5a174. Checks:11 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	WARNING	254
linux-devel-x86_64	WARNING	310
source / vignettes	OK	313
linux-release-arm64	WARNING	264
linux-release-x86_64	WARNING	301
macos-release-arm64	WARNING	162
macos-release-x86_64	WARNING	479
macos-oldrel-arm64	WARNING	150
macos-oldrel-x86_64	WARNING	456
windows-devel	WARNING	284
windows-release	WARNING	264
windows-oldrel	WARNING	279
wasm-release	OK	201